CI Convert (LIF to Images and Images to LIF)

• Convert and Stitch[2] TileScans from Leica LIF/XLEF to SVS/TIFF/ImageJTiff format.
• Convert Large Stitched (Merged TileScans) images from Leica LIF/XLEF  to SVS/TIFF/ImageJTiff format.
• Convert image files to Leica LIF Format. Multichannel images in 2D, 3D and time are supported.
• Convert ImageXpress Pico Experiments to Leica LIF.

This program uses the Matlab Runtime 2023b , the installer wil download the Matlab Runtime automatically, the zipfile contains the CIConvert executable only, so you have to install the Matlab Runtime yourself.

Version 9.2  CIConvertInstaller92.exe or CIConvert92.zip
– Removed Support for ImageJ Color Lookup Tables.

Version 9.0
– Leica Mica 12bit RGB files Support.
– XLEF Subfolder support
– Small Bugs Fixed.

Version 8.8
– Leica Mica Support.
– Small Bugs Fixed.

Version 8.3
– Multichannel ImageXpress Pico bug solved.
– Multichannel ICS Version 1 bug solved

Version 8.2
– Increased “float >> uint16” Intensity Scaling, Max 10 was sometimes to low. Max is no 100.

Version 8.1
– Added More Z-Stack Projection Options

Version 8.0
– Added Conversion to ImageJ Hyperstack TIFFs (up to 8 channels)
– Added Z-Stacks Projection[1] with Extended Depth of Focus and Max Intensity Projection (based on fstack)
– Combined Image files and Pico Experiments Raw Files Conversion.
– Remove Option for separate LIF Files
– Added Combining Tiles en Names to Series.
– Speeded up Conversion of ICS files.
– Removed OME-Tiff Folder Convert (use older version for this)

This program uses BIO-FORMATS for importing image files.
BIO-FORMATS: DOI: 10.1083/jcb.201004104 PMID: 20513764 PMCID: PMC2878938