Machine and Deep Learning

ilastik Ilastik

Leverage machine learning algorithms to easily segment, classify, track and count your cells or other experimental data. Most operations are interactive, even on large datasets: you just draw the labels and immediately see the result. No machine learning expertise required.

Logo Cellpose

A generalist algorithm for cell and nucleus segmentation.

StarDist  (Fiji Plugin)
(or one with splines instead of starconvexes: experimental: